The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment

Luis David Alcaraz, Gabriela Olmedo, Germán Bonilla, René Cerritos, Gustavo Hernández, Alfredo Cruz, Enrique Ramírez, Catherine Putonti, Beatriz Jiménez, Eva Martínez, Varinia López, Jacqueline L. Arvizu, Francisco Ayala, Francisco Razo, Juan Caballero, Janet Siefert, Luis Eguiarte, Jean Philippe Vielle, Octavio Martínez, Valeria SouzaAlfredo Herrera-Estrella, Luis Herrera-Estrella

Research output: Contribution to journalArticlepeer-review

55 Scopus citations

Abstract

The Cuatro Ciénegas Basin (CCB) in the central part of the Chihuahan desert (Coahuila, Mexico) hosts a wide diversity of microorganisms contained within springs thought to be geomorphological relics of an ancient sea. A major question remaining to be answered is whether bacteria from CCB are ancient marine bacteria that adapted to an oligotrophic system poor in NaCl, rich in sulfates, and with extremely low phosphorus levels (<0.3 μM). Here, we report the complete genome sequence of Bacillus coahuilensis, a sporulating bacterium isolated from the water column of a desiccation lagoon in CCB. At 3.35 Megabases this is the smallest genome sequenced to date of a Bacillus species and provides insights into the origin, evolution, and adaptation of B. coahuilensis to the CCB environment. We propose that the size and complexity of the B. coahuilensis genome reflects the adaptation of an ancient marine bacterium to a novel environment, providing support to a "marine isolation origin hypothesis" that is consistent with the geology of CCB. This genomic adaptation includes the acquisition through horizontal gene transfer of genes involved in phosphorous utilization efficiency and adaptation to high-light environments. The B. coahuilensis genome sequence also revealed important ecological features of the bacterial community in CCB and offers opportunities for a unique glimpse of a microbe-dominated world last seen in the Precambrian.

Original languageEnglish
Pages (from-to)5803-5808
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume105
Issue number15
DOIs
StatePublished - Apr 15 2008

Keywords

  • Evolution
  • Genomic adaptation
  • Horizontal gene transfer
  • Phosphorus stress
  • Sulfolipids

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