Optimal infinite horizon control for probabilistic boolean networks

Ranadip Pal, Aniruddha Datta, Edward R. Dougherty

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Abstract

External control of a genetic regulatory network is used for the purpose of avoiding undesirable states, such as those associated with disease. Heretofore, intervention has focused on finite-horizon control, i.e., control over a small number of stages. This paper considers the design of optimal infinite-horizon control for context-sensitive probabilistic Boolean networks (PBNs). It can also be applied to instantaneously random PBNs. The stationary policy obtained is independent of time and dependent on the current state. We concentrate on discounted problems with bounded cost per stage and on average-cost-per-stage problems. These formulations are used to generate stationary policies for a PBN constructed from melanoma gene-expression data. The results show that the stationary policies obtained by the two different formulations are capable of shifting the probability mass of the stationary distribution from undesirable states to desirable ones.

Original languageEnglish
Title of host publicationProceedings of the 2006 American Control Conference
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages668-673
Number of pages6
ISBN (Print)1424402107, 9781424402106
DOIs
StatePublished - 2006
Event2006 American Control Conference - Minneapolis, MN, United States
Duration: Jun 14 2006Jun 16 2006

Publication series

NameProceedings of the American Control Conference
Volume2006
ISSN (Print)0743-1619

Conference

Conference2006 American Control Conference
CountryUnited States
CityMinneapolis, MN
Period06/14/0606/16/06

Fingerprint Dive into the research topics of 'Optimal infinite horizon control for probabilistic boolean networks'. Together they form a unique fingerprint.

Cite this