TY - JOUR
T1 - Gramene database
T2 - Navigating plant comparative genomics resources
AU - Gupta, Parul
AU - Naithani, Sushma
AU - Tello-Ruiz, Marcela Karey
AU - Chougule, Kapeel
AU - D'Eustachio, Peter
AU - Fabregat, Antonio
AU - Jiao, Yinping
AU - Keays, Maria
AU - Lee, Young Koung
AU - Kumari, Sunita
AU - Mulvaney, Joseph
AU - Olson, Andrew
AU - Preece, Justin
AU - Stein, Joshua
AU - Wei, Sharon
AU - Weiser, Joel
AU - Huerta, Laura
AU - Petryszak, Robert
AU - Kersey, Paul
AU - Stein, Lincoln D.
AU - Ware, Doreen
AU - Jaiswal, Pankaj
N1 - Publisher Copyright:
© 2016 The Authors
PY - 2016/11/1
Y1 - 2016/11/1
N2 - Gramene (http://www.gramene.org) is an online, open source, curated resource for plant comparative genomics and pathway analysis designed to support researchers working in plant genomics, breeding, evolutionary biology, system biology, and metabolic engineering. It exploits phylogenetic relationships to enrich the annotation of genomic data and provides tools to perform powerful comparative analyses across a wide spectrum of plant species. It consists of an integrated portal for querying, visualizing and analyzing data for 44 plant reference genomes, genetic variation data sets for 12 species, expression data for 16 species, curated rice pathways and orthology-based pathway projections for 66 plant species including various crops. Here we briefly describe the functions and uses of the Gramene database.
AB - Gramene (http://www.gramene.org) is an online, open source, curated resource for plant comparative genomics and pathway analysis designed to support researchers working in plant genomics, breeding, evolutionary biology, system biology, and metabolic engineering. It exploits phylogenetic relationships to enrich the annotation of genomic data and provides tools to perform powerful comparative analyses across a wide spectrum of plant species. It consists of an integrated portal for querying, visualizing and analyzing data for 44 plant reference genomes, genetic variation data sets for 12 species, expression data for 16 species, curated rice pathways and orthology-based pathway projections for 66 plant species including various crops. Here we briefly describe the functions and uses of the Gramene database.
UR - http://www.scopus.com/inward/record.url?scp=85007289026&partnerID=8YFLogxK
U2 - 10.1016/j.cpb.2016.12.005
DO - 10.1016/j.cpb.2016.12.005
M3 - Article
AN - SCOPUS:85007289026
SN - 2214-6628
VL - 7-8
SP - 10
EP - 15
JO - Current Plant Biology
JF - Current Plant Biology
ER -