Algorithms for Drug Sensitivity Prediction

Carlos De Niz, Raziur Rahman, Xiangyuan Zhao, Ranadip Pal

Research output: Contribution to journalReview articlepeer-review

22 Scopus citations

Abstract

Precision medicine entails the design of therapies that are matched for each individual patient. Thus, predictive modeling of drug responses for specific patients constitutes a significant challenge for personalized therapy. In this article, we consider a review of approaches that have been proposed to tackle the drug sensitivity prediction problem especially with respect to personalized cancer therapy. We first discuss modeling approaches that are based on genomic characterizations alone and further the discussion by including modeling techniques that integrate both genomic and functional information. A comparative analysis of the prediction performance of four representative algorithms, elastic net, random forest, kernelized Bayesian multi-task learning and deep learning, reflecting the broad classes of regularized linear, ensemble, kernelized and neural network-based models, respectively, has been included in the paper. The review also considers the challenges that need to be addressed for successful implementation of the algorithms in clinical practice.

Original languageEnglish
Article number77
JournalAlgorithms
Volume9
Issue number4
DOIs
StatePublished - 2016

Keywords

  • Drug sensitivity prediction
  • Personalized medicine
  • Prediction algorithms
  • Tumor response modeling

Fingerprint

Dive into the research topics of 'Algorithms for Drug Sensitivity Prediction'. Together they form a unique fingerprint.

Cite this