• 2235 Citations (Scopus)
  • 23 h-Index
20042019

Research output per year

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Scholarly Research

2019

Evaluating the consistency of large-scale pharmacogenomic studies

Rahman, R., Dhruba, S. R., Matlock, K., De-Niz, C., Ghosh, S. & Pal, R., Sep 27 2019, In : Briefings in Bioinformatics. 20, 5, p. 1734-1753 20 p.

Research output: Contribution to journalReview article

Evaluating the consistency of large-scale pharmacogenomic studies

Rahman, R., Dhruba, S. R., Matlock, K., Negron, C. D. N. P., Ghosh, S. & Pal, R., May 2019, In : Briefings in Bioinformatics. p. 1734–1753

Research output: Contribution to journalArticle

Functional Random Forests with applications in dose response predictions

Rahman, R., Dhruba, S. R., Ghosh, S. & Pal, R., Feb 2019, In : Scientific reports.

Research output: Contribution to journalArticle

Functional random forest with applications in dose-response predictions

Rahman, R., Dhruba, S. R., Ghosh, S. & Pal, R., Dec 1 2019, In : Scientific reports. 9, 1, 1628.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Potential Active Shooter Detection Based on Radar Micro-Doppler and Range-Doppler Analysis Using Artificial Neural Network

Li, Y., Peng, Z., Pal, R. & Li, C., Feb 1 2019, In : IEEE Sensors Journal. 19, 3, p. 1052-1063 12 p., 8519763.

Research output: Contribution to journalArticle

14 Scopus citations

Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Pal, R., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J. & 7 others, Hawkins, D. S., Rudzinski, E. R., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E. & Keller, C., May 21 2019, In : Skeletal Muscle. 9, 1, 12.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Preclinical rationale for entinostat in embryonal rhabdomyosarcoma.

Bharathy, N., Berlow, N., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Pal, R., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J. & 7 others, Hawkins, D. S., Rudzinski, E. R., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E. & Keller, C., May 21 2019, In : Default journal. p. 12

Research output: Contribution to journalArticle

Predictive modeling of anti-cancer drug sensitivity from genetic characterizations

Rahman, R. & Pal, R., 2019, Methods in Molecular Biology. Humana Press Inc., p. 227-241 15 p. (Methods in Molecular Biology; vol. 1878).

Research output: Chapter in Book/Report/Conference proceedingChapter

Predictive modeling of anti-cancer drug sensitivity from genetic characterizations

Rahman, R. & Pal, R., Jan 1 2019, Predictive modeling of anti-cancer drug sensitivity from genetic characterizations. Springer, Vol. 1878. p. 227-241

Research output: Chapter in Book/Report/Conference proceedingChapter

Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

Berlow, N. E., Rikhi, R., Geltzeiler, M., Abraham, J., Svalina, M. N., Davis, L. E., Wise, E., Mancini, M., Noujaim, J., Mansoor, A., Quist, M. J., Matlock, K. L., Goros, M. W., Hernandez, B. S., Doung, Y. C., Thway, K., Tsukahara, T., Nishio, J., Huang, E. T., Airhart, S. & 9 others, Bult, C. J., Gandour-Edwards, R., Maki, R. G., Jones, R. L., Michalek, J. E., Milovancev, M., Ghosh, S., Pal, R. & Keller, C., Jun 17 2019, In : BMC Cancer. 19, 1, 593.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma.

Berlow, N., Rikhi, R., Geltzeiler, M., Abraham, J., Svalina, M. N., Davis, L. E., Wise, E., Mancini, M., Noujaim, J., Mansoor, A., Quist, M. J., Matlock, K., Goros, M. W., Hernandez, B. S., Doung, Y. C., Thway, K., Tsukahara, T., Nishio, J., Huang, E. T., Airhart, S. & 9 others, Bult, C. J., Gandour-Edwards, R., Maki, R. G., Jones, R. L., Michalek, J. E., Milovancev, M., Ghosh, S., Pal, R. & Keller, C., Jun 17 2019, In : Default journal. p. 593

Research output: Contribution to journalArticle

Recursive model for dose-time responses in pharmacological studies

Dhruba, S. R., Rahman, A., Rahman, R., Ghosh, S. & Pal, R., Jun 20 2019, In : BMC Bioinformatics. 20, 317.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Recursive model for dose-time responses in pharmacological studies.

Dhruba, S. R., Rahman, A., Rahman, R., Ghosh, S. & Pal, R., Jun 20 2019, In : BMC Bioinformatics.

Research output: Contribution to journalArticle

Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Yoon, B. J., Qian, X., Kahveci, T. & Pal, R., Jun 20 2019, In : BMC Bioinformatics. 20, 316.

Research output: Contribution to journalReview article

Open Access

Selected research articles from the 2018 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC).

Yoon, B. J., Qian, X., Kahveci, T. & Pal, R., Jun 20 2019, In : Default journal. p. 316

Research output: Contribution to journalArticle

Sstack: An R package for stacking with applications to scenarios involving sequential addition of samples and features

Matlock, K., Rahman, R., Ghosh, S. & Pal, R., Sep 1 2019, In : Bioinformatics. 35, 17, p. 3143-3145 3 p.

Research output: Contribution to journalArticle

Sstack: An R Package for Stacking with Applications to Scenarios Involving Sequential Addition of Samples and Features

Matlock, K., Rahman, R., Ghosh, S. & Pal, R., Jan 2019, In : Bioinformatics. p. btz010

Research output: Contribution to journalArticle

2018

Adaptive Multi-Task Elastic Net Based Feature Selection from Pharmacogenomics Databases

Rahman, R., Perera, A. A. C., Ghosh, S. & Pal, R., Jul 2018.

Research output: Contribution to conferencePaper

An investigation of proteomic data for application in precision medicine

Matlock, K., Dhruba, S. R., Nazir, M. & Pal, R., Apr 6 2018, 2018 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2018. Institute of Electrical and Electronics Engineers Inc., p. 377-380 4 p. (2018 IEEE EMBS International Conference on Biomedical and Health Informatics, BHI 2018; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Scopus citations

An Investigation of Proteomic Data for Application in Precision Medicine

Matlock, K., Dhruba, S., Nazir, M. & Pal, R., Apr 2018.

Research output: Contribution to conferencePaper

Application of transfer learning for cancer drug sensitivity prediction

Dhruba, S. R., Rahman, R., Matlock, K., Ghosh, S. & Pal, R., Dec 28 2018, In : BMC Bioinformatics. 19, 497.

Research output: Contribution to journalArticle

Open Access
3 Scopus citations

Application of transfer learning for cancer drug sensitivity prediction

Dhruba, S. R., Rahman, R., Matlock, K., Ghosh, S. & Pal, R., Dec 2018, In : BMC Bioinformatics. p. 497

Research output: Contribution to journalArticle

Deep Sequencing Data Analysis

Ghosh, B. K., Datta, A. & Pal, R., Mar 1 2018, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 15, 2, p. 482-483 2 p.

Research output: Contribution to journalEditorial

Deep Sequencing Data Analysis

Ghosh, B., Datta, A. & Pal, R., Mar 1 2018, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Research output: Contribution to journalArticle

Deep Sequencing Data Analysis

Ghosh, B., Datta, A. & Pal, R., Mar 1 2018, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. p. 482-483

Research output: Contribution to journalArticle

Dimensionality Reduction based Transfer Learning applied to Pharmacogenomics Databases

Dhruba, S. R., Rahman, R., Matlock, K., Ghosh, S. & Pal, R., Oct 26 2018.

Research output: Contribution to conferencePaper

Dimensionality Reduction based Transfer Learning applied to Pharmacogenomics Databases

Dhruba, S. R., Rahmanl, R., Matlockl, K., Ghosh, S. & Pal, R., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., p. 1246-1249 4 p. 8512457. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2018-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Scopus citations

Investigation of model stacking for drug sensitivity prediction

Matlock, K., De Niz, C., Rahman, R., Ghosh, S. & Pal, R., Mar 21 2018, In : BMC Bioinformatics. 19, 71.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Investigation of Model Stacking for Drug Sensitivity Prediction

Matlock, K., Negron, C. D. N. P., Rahman, R., Ghosh, S. & Pal, R., Mar 2018, In : BMC Bioinformatics. p. 71

Research output: Contribution to journalArticle

Modeling of drug diffusion in a solid tumor leading to tumor cell death

Rahman, A., Ghosh, S. & Pal, R., Dec 18 2018, In : Physical Review E. 98, 6, 062408.

Research output: Contribution to journalArticle

Modeling of drug diffusion in a solid tumor leading to tumor cell death.

Rahman, A., Ghosh, S. & Pal, R., Dec 2018, In : Physical Review E.

Research output: Contribution to journalArticle

Potential Active Shooter Detection Based on Radar Micro-Doppler and Range-Doppler Analysis Using Artificial Neural Network

Li, Y., Peng, Z., Pal, R. & Li, C., Nov 2018, In : IEEE Sensor Journal. p. 1052 - 1063

Research output: Contribution to journalArticle

Recursive model for dose-time responses in pharmacological studies.

Rahman, A., Dhruba, S. R., Ghosh, S. & Pal, R., 2018.

Research output: Contribution to conferencePaper

Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Yoon, B. J., Qian, X., Kahveci, T. & Pal, R., Mar 21 2018, In : BMC Bioinformatics. 19, 69.

Research output: Contribution to journalEditorial

Open Access

Selected research articles from the 2017 International Workshop on Computational Network Biology: Modeling, Analysis, and Control (CNB-MAC)

Yoon, B-J., Qian, X., Kahveci, T. & Pal, R., Mar 21 2018, In : BMC Bioinformatics. p. 69

Research output: Contribution to journalArticle

Sequential Feature Selection and Inference using Multivariate Random Forests

Mayer, J., Rahman, R., Ghosh, S. & Pal, R., Apr 2018, In : Bioinformatics. p. 1336–1344

Research output: Contribution to journalArticle

Sequential feature selection and inference using multi-variate random forests

Mayer, J., Rahman, R., Ghosh, S. & Pal, R., Apr 15 2018, In : Bioinformatics. 34, 8, p. 1336-1344 9 p.

Research output: Contribution to journalArticle

Open Access
2 Scopus citations

The HDAC3-SMARCA4-miR-27a axis promotes expression of the PAX3:FOXO1 fusion oncogene in rhabdomyosarcoma

Bharathy, N., Berlow, N. E., Wang, E., Abraham, J., Settelmeyer, T. P., Hooper, J. E., Svalina, M. N., Ishikawa, Y., Zientek, K., Bajwa, Z., Goros, M. W., Hernandez, B. S., Wolff, J. E., Rudek, M. A., Xu, L., Anders, N. M., Pal, R., Harrold, A. P., Davies, A. M., Ashok, A. & 18 others, Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Chatterjee, B., Bächinger, H. P., Barr, F. G., Liddle, J., Garcia, B. A., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E. & Keller, C., Nov 20 2018, In : Science Signaling. 11, 557, aau7632.

Research output: Contribution to journalArticle

11 Scopus citations

The HDAC3-SMARCA4-miR-27a axis promotes expression of the PAX3:FOXO1 fusion oncogene in rhabdomyosarcoma

Wolff, J. E., Rudek, M. A., Xu, L., Anders, N. M., Pal, R., Harrold, A. P., Davies, A. M., Ashok, A., Bushby, D., Mancini, M., Noakes, C., Goodwin, N. C., Ordentlich, P., Keck, J., Hawkins, D. S., Rudzinski, E. R., Chatterjee, B., Bächinger, H. P., Barr, F. G., Liddle, J. & 6 others, Garcia, B. A., Mansoor, A., Perkins, T. J., Vakoc, C. R., Michalek, J. E. & Keller, C., Nov 20 2018, In : Default journal.

Research output: Contribution to journalArticle

2017

Combination therapy design for maximizing sensitivity and minimizing toxicity

Matlock, K., Berlow, N., Keller, C. & Pal, R., Mar 22 2017, In : BMC Bioinformatics. 18, 116.

Research output: Contribution to journalArticle

Open Access
6 Scopus citations

Combination therapy design for maximizing sensitivity and minimizing toxicity

Matlock, K., Berlow, N., Keller, C. & Pal, R., Mar 2017, In : BMC Bioinformatics. p. 116

Research output: Contribution to journalArticle

Heterogeneity aware random forest for drug sensitivity prediction

Rahman, R., Matlock, K., Ghosh, S. & Pal, R., Dec 1 2017, In : Scientific reports. 7, 1, 11347.

Research output: Contribution to journalArticle

Open Access
11 Scopus citations

Heterogeneity Aware Random Forest for Drug Sensitivity Prediction

Rahman, R., Matlock, K., Ghosh, S. & Pal, R., Sep 2017, In : Scientific reports. p. 11347

Research output: Contribution to journalArticle

IntegratedMRF: Random forest-based framework for integrating prediction from different data types

Rahman, R., Otridge, J. & Pal, R., May 1 2017, In : Bioinformatics. 33, 9, p. 1407-1410 4 p.

Research output: Contribution to journalArticle

23 Scopus citations

IntegratedMRF: Random Forest based framework for integrating prediction from different data types

Rahman, R., Otridge, J. & Pal, R., 2017, In : Bioinformatics.

Research output: Contribution to journalArticle

Investigation of Model Stacking for Drug Sensitivity Prediction

Matlock, K., Negron, C. D. N. P., Rahman, R., Ghosh, S. & Pal, R., Aug 2017.

Research output: Contribution to conferencePaper

Target inhibition maps based on responses to kinase inhibitors

Berlow, N. & Pal, R., 2017, Methods in Molecular Biology. Humana Press Inc., p. 507-522 16 p. (Methods in Molecular Biology; vol. 1636).

Research output: Chapter in Book/Report/Conference proceedingChapter

Target Inhibition Maps based on Responses to Kinase Inhibitors

Berlow, N. & Pal, R., Jul 2017, Target Inhibition Maps based on Responses to Kinase Inhibitors. Springer, Vol. 1636. p. 507-522

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

A descriptive model of resting-state networks using Markov chains

Xie, H., Pal, R. & Mitra, S., Oct 13 2016, 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016. Institute of Electrical and Electronics Engineers Inc., p. 3594-3597 4 p. 7591505. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2016-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution